Clinical
2025.03
Transferring Preclinical Drug Response to Patient via Tumor Heterogeneity-Aware Alignment and Perturbation Modeling
ICLR 2025 workshop MLGenX
2025.01
Increased local DNA methylation disorder in AMLs with DNMT3A-destabilizing variants and its clinical implication
Nature Communications
2024.10
ChemAP: predicting drug approval with chemical structures before clinical trial phase by leveraging multi-modal embedding space and knowledge distillation
Scientific Reports
2024.09
DGDRP: drug-specific gene selection for drug response prediction via re-ranking through propagating and learning biological network
Frontiers in Genetics
2024.07
Transfer learning of condition-specific perturbation in gene interactions improves drug response prediction
Bioinformatics
2024.04
Multi-layered Knowledge Graph Neural Network Reveals Pathway-level Agreement of Three Breast Cancer Multi-gene Assays
Computational and Structural Biotechnology Journal
2023.09
GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype
2023.08
A model-agnostic framework to enhance knowledge graph-based drug combination prediction with drug–drug interaction data and supervised contrastive learning
Briefings in Bioinformatics
2023.07
Clinical Note Owns its Hierarchy: Multi-Level Hypergraph Neural Networks for Patient-Level Representation Learning
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics
2023.06
Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers
2023.03
Improved drug response prediction by drug target data integration via network-based profiling
2022.11
DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer
International Journal of Molecular Sciences
2022.08
Risk Stratification for Breast Cancer Patient by Simultaneous Learning of Molecular Subtype and Survival Outcome Using Genetic Algorithm-Based Gene Set Selection
Cancers
2022.04
AutoCoV: tracking the early spread of COVID‐19 in terms of the spatial and temporal patterns from embedding space by K‐mer based deep learning
BMC Bioinformatics
2022.01
Embedding of FDA Approved Drugs in Chemical Space Using Cascade Autoencoder with Metric Learning
2022 IEEE International Conference on Big Data and Smart Computing (BigComp)
